Commentaries:
Jamieson, Fausset, and Brown
When Jesus . . . saw her weeping, and the Jews . . . weeping . . . he groaned in the spirit—the tears of Mary and her friends acting sympathetically upon Jesus, and drawing forth His emotions. What a vivid and beautiful outcoming of His "real" humanity! The word here rendered "groaned" does not mean "sighed" or "grieved," but rather "powerfully checked his emotion"—made a visible effort to restrain those tears which were ready to gush from His eyes.
and was troubled—rather, "troubled himself" (Margin); referring probably to this visible difficulty of repressing His emotions.
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